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- supraHex
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("supraHex")
In most cases, you don't need to download the package archive at all.
supraHex
|
This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see supraHex.
A supra-hexagonal map for analysing tabular omics data
Bioconductor version: 2.13
A supra-hexagonal map is a giant hexagon on a 2-dimensional grid seamlessly consisting of smaller hexagons. It is supposed to train, analyse and visualise a high-dimensional omics data. The supraHex is able to carray out gene/meta-gene clustering and sample correlation, plus intuitive visualisations to facilitate exploratory analysis. Uniquely to this package, users can simultaneously understand their own omics data in a sample-specific fashion but without loss of information on large genes.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang <hfang at cs.bris.ac.uk>
Citation (from within R,
enter citation("supraHex")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("supraHex")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("supraHex")
| R Script | supraHex User Manual | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, Clustering, GeneExpression, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.0.1), hexbin |
| Imports | grid, MASS, Biobase |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://supfam.org/SUPERFAMILY/dcGO/supraHex.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | supraHex_1.0.0.tar.gz |
| Windows Binary | supraHex_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | supraHex_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/supraHex/tree/release-2.13 |
| Package Short Url | http://bioconductor.org/packages/supraHex/ |
| Package Downloads Report | Download Stats |
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