- Home
- Bioconductor 2.13
- Software Packages
- rTANDEM
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTANDEM")
In most cases, you don't need to download the package archive at all.
rTANDEM
|
This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see rTANDEM.
Encapsulates X!Tandem in R.
Bioconductor version: 2.13
This package encapsulate X!Tandem in R. In its most basic functionality, this package allows to call tandem(input) from R, just as tandem.exe /path/to/input.xml would be used to run X!Tandem from the command line. Classes are also provided for taxonomy and parameters objects and methods are provided to convert xml files to R objects and vice versa.
Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Rene Paradis <rene.paradis at genome.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>
Citation (from within R,
enter citation("rTANDEM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTANDEM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rTANDEM")
| R Script | The rTANDEM users guide | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.2.1 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | Artistic-1.0 | file LICENSE |
| Depends | XML, Rcpp, data.table (>= 1.8.8) |
| Imports | methods |
| LinkingTo | Rcpp |
| Suggests | biomaRt |
| SystemRequirements | rTANDEM uses expat and pthread libraries. See the README file for details. |
| Enhances | |
| URL | |
| Depends On Me | shinyTANDEM |
| Imports Me | |
| Suggests Me | RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rTANDEM_1.2.1.tar.gz |
| Windows Binary | rTANDEM_1.2.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | rTANDEM_1.2.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rTANDEM/tree/release-2.13 |
| Package Short Url | http://bioconductor.org/packages/rTANDEM/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
