To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("customProDB")

In most cases, you don't need to download the package archive at all.

customProDB

This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see customProDB.

Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.

Bioconductor version: 2.13

Generate customized protein sequence database from RNA-Seq data for proteomics search

Author: xiaojing wang

Maintainer: xiaojing wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("customProDB")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("customProDB")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customProDB")

PDF	R Script	Introduction to customProDB
PDF		Reference Manual

biocViews	Software
Version	1.2.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports	Rsamtools(>= 1.10.2), Biostrings(>= 2.26.3), IRanges, GenomicRanges(>= 1.13.18), GenomicFeatures(>= 1.13.15), biomaRt(>= 2.17.1), stringr, RCurl, plyr, VariantAnnotation(>= 1.7.28), rtracklayer, RSQLite, AnnotationDbi
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	customProDB_1.2.0.tar.gz
Windows Binary	customProDB_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	customProDB_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/customProDB/tree/release-2.13
Package Short Url	http://bioconductor.org/packages/customProDB/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: