To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

In most cases, you don't need to download the package archive at all.

AllelicImbalance

This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see AllelicImbalance.

Investigates allele specific expression

Bioconductor version: 2.13

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

PDF	R Script	AllelicImbalance
PDF		Reference Manual

biocViews	AI, ASE, Allelic Imbalance, Genetics, HighThroughputSequencing, Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-3
Depends	GenomicRanges, R (>= 3.0.0)
Imports	methods, BiocGenerics, Biostrings, IRanges, GenomicFeatures, Rsamtools, AnnotationDbi
LinkingTo
Suggests	RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AllelicImbalance_1.0.0.tar.gz
Windows Binary	AllelicImbalance_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	AllelicImbalance_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AllelicImbalance/tree/release-2.13
Package Short Url	http://bioconductor.org/packages/AllelicImbalance/
Package Downloads Report	Download Stats

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