To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.10

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <david.clayton at cimr.cam.ac.uk>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

PDF		Data input
PDF		Imputation and meta-analysis
PDF		LD statistics
PDF		Principal components analysis
PDF		snpMatrix-differences
PDF		snpStats introduction
PDF		TDT tests
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.6.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	GPL-3
Depends	R (>= 2.10.0), survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix
LinkingTo
Suggests	hexbin
SystemRequirements
Enhances
URL	http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me	GGBase, GGdata, ggtut, gwascat
Imports Me	GGtools, VariantAnnotation
Suggests Me	crlmm
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	snpStats_1.6.0.tar.gz
Windows Binary	snpStats_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/snpStats/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/snpStats/
Package Downloads Report	Download Stats