To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

In most cases, you don't need to download the package archive at all.

r3Cseq

   

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see r3Cseq.

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: 2.10

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

Citation (from within R, enter citation("r3Cseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("r3Cseq")

 

PDF r3Cseq
PDF   Reference Manual

Details

biocViews HighThroughputSequencing, Preprocessing, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License GPL-3
Depends R (>= 2.14.0), IRanges, BSgenome, ShortRead, rtracklayer, RColorBrewer, methods
Imports
LinkingTo
Suggests BSgenome.Mmusculus.UCSC.mm9
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source r3Cseq_1.2.0.tar.gz
Windows Binary r3Cseq_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/r3Cseq/tree/release-2.10
Package Short Url http://bioconductor.org/packages/r3Cseq/
Package Downloads Report Download Stats

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