To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PING")

In most cases, you don't need to download the package archive at all.

PING

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see PING.

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Bioconductor version: 2.10

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo, <swoo at fhcrc.org>

Maintainer: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo, <swoo at fhcrc.org>

Citation (from within R, enter citation("PING")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PING")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PING")

biocViews	Clustering, Sequencing, Software, Statistics, Visualization
Version	1.0.0
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 2.11.0), chipseq
Imports	methods, graphics, grDevices, stats, GenomeGraphs, fda, IRanges, GenomicRanges, BSgenome, stats4, BiocGenerics
LinkingTo
Suggests	snowfall, ShortRead, rtracklayer
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	PING_1.0.0.tar.gz
Windows Binary	PING_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/PING/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/PING/
Package Downloads Report	Download Stats

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