To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSRI")

In most cases, you don't need to download the package archive at all.

GSRI

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see GSRI.

Gene Set Regulation Index

Bioconductor version: 2.10

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at embl.de>

Citation (from within R, enter citation("GSRI")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSRI")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

PDF		Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF		Reference Manual
Text		NEWS
Text		LICENSE

biocViews	Bioinformatics, DifferentialExpression, Genetics, Microarray, Software, Transcription
Version	2.4.0
In Bioconductor since	BioC 2.6 (R-2.11) (6 years)
License	GPL-3
Depends	R (>= 2.14.2), fdrtool
Imports	methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
LinkingTo
Suggests	limma, hgu95av2.db
SystemRequirements
Enhances	multicore
URL	http://julian-gehring.github.com/GSRI/
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GSRI_2.4.0.tar.gz
Windows Binary	GSRI_2.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GSRI/tree/release-2.10
Package Short Url	http://bioconductor.org/packages/GSRI/
Package Downloads Report	Download Stats

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