To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DOSE")

In most cases, you don't need to download the package archive at all.

DOSE

   

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see DOSE.

Disease Ontology Semantic and Enrichment analysis

Bioconductor version: 2.10

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("DOSE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DOSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DOSE")

 

PDF An introduction to DOSE
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Bioinformatics, Software
Version 1.2.1
In Bioconductor since BioC 2.9 (R-2.14) (4.5 years)
License Artistic-2.0
Depends R (>= 2.10)
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, ggplot2, graphics
LinkingTo
Suggests clusterProfiler, GOSemSim, ReactomePA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me clusterProfiler
Suggests Me GOSemSim, ReactomePA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DOSE_1.2.1.tar.gz
Windows Binary DOSE_1.2.1.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DOSE/tree/release-2.10
Package Short Url http://bioconductor.org/packages/DOSE/
Package Downloads Report Download Stats

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