Harshlight

A "corrective make-up" program for microarray chips

The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned. The defective areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection.

Author Mayte Suarez-Farinas, Maurizio Pellegrino, Knut W. Mittkowsky, Marcelo O. Magnasco.
Maintainer Maurizio Pellegrino

Vignettes (Documentation)

Package Downloads

Harshlight.pdf
Source Harshlight_1.2.0.tar.gz
Windows binary Harshlight_1.2.0.zip
OS X binary Harshlight_1.2.0.tgz

Details

biocViews
Depends R, affy
Suggests
Imports
SystemRequirements
License GPL version 2 or later
URL http://asterion.rockefeller.edu/Harshlight/
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