Package: ALLMLL Version: 1.0.2 Title: A subset of arrays from a large acute lymphoblastic leukemia (ALL) study Description: This package provides probe-level data for 20 HGU133A and 20 HGU133B arrays which are a subset of arrays from a large ALL study. The data is for the MLL arrays. This data was published in Mary E. Ross, Xiaodong Zhou, Guangchun Song, Sheila A. Shurtleff, Kevin Girtman, W. Kent Williams, Hsi-Che Liu, Rami Mahfouz, Susana C. Raimondi, Noel Lenny, Anami Patel, and James R. Downing (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling Blood 102: 2951-2959 Author: B. M. Bolstad License: GPL version 2.0 source.ver: src/contrib/ALLMLL_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.3/ALLMLL_1.0.2.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/ALLMLL_1.0.2.tgz Package: AmpAffyExample Version: 1.0.3 Depends: R (>= 1.6.2), affy (>= 1.2) Suggests: hgu133acdf Title: Example of Amplified Data Description: Six arrays. Three from amplified RNA, three from the typical procedure. Author: Rafael A. Irizarry Maintainer: Rafael A. Irizarry License: LGPL version 2 or newer source.ver: src/contrib/AmpAffyExample_1.0.3.tar.gz win.binary.ver: bin/windows/contrib/2.3/AmpAffyExample_1.0.3.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/AmpAffyExample_1.0.3.tgz Package: beta7 Version: 0.5.5 Depends: R (>= 1.9.0) Title: Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7. Description: Data from 6 gpr files aims to identify differential expressed genes between the beta 7+ and beta 7- memory T helper cells. Author: Jean Yang Maintainer: Jean Yang License: LGPL source.ver: src/contrib/beta7_0.5.5.tar.gz win.binary.ver: bin/windows/contrib/2.3/beta7_0.5.5.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/beta7_0.5.5.tgz Package: facsDorit Version: 1.1.1 Depends: R (>= 1.9.1), prada (>= 1.0.5) Title: DFKZ FACS example data Description: FACS example data for cell-based assays. This data is used in the examples and vignettes of the package prada. Author: Florian Hahne Maintainer: Florian Hahne URL: http://www.dkfz.de/mga License: GPL2 source.ver: src/contrib/facsDorit_1.1.1.tar.gz win.binary.ver: bin/windows/contrib/2.3/facsDorit_1.1.1.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/facsDorit_1.1.1.tgz Package: hgu2beta7 Version: 1.1.2 Depends: R(>= 2.0.0) Title: A data package containing annotation data for hgu2beta7 Description: Annotation data file for hgu2beta7 assembled using data from public data repositories Author: Lin, Chenwei Maintainer: Ting-Yuan Liu License: LGPL source.ver: src/contrib/hgu2beta7_1.1.2.tar.gz win.binary.ver: bin/windows/contrib/2.3/hgu2beta7_1.1.2.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/hgu2beta7_1.1.2.tgz Package: kidpack Version: 1.2.1 Depends: R (>= 1.9.0), Biobase (>= 1.4.0) Title: DFKZ kidney package Description: kidney microarray data Author: Wolfgang Huber Maintainer: Wolfgang Huber URL: http://www.dkfz.de/mga License: GPL2 source.ver: src/contrib/kidpack_1.2.1.tar.gz win.binary.ver: bin/windows/contrib/2.3/kidpack_1.2.2.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/kidpack_1.2.1.tgz vignettes: vignettes/kidpack/inst/doc/kidpack.pdf Package: LogitBoost Version: 1.1-9 Title: Classification with LogitBoost, fixes by vjc Description: An Implementation of the LogitBoost Classification Algorithm Author: Marcel Dettling Maintainer: Marcel Dettling, URL: http://www.stat.math.ethz.ch/~dettling License: GPL 2.0 source.ver: src/contrib/LogitBoost_1.1-9.tar.gz win.binary.ver: bin/windows/contrib/2.3/LogitBoost_1.1-9.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/LogitBoost_1.1-9.tgz vignettes: vignettes/LogitBoost/inst/doc/lob-003.pdf Package: ProData Version: 0.2.2 Title: SELDI-TOF data of Breast cancer samples Description: A data package of SELDI-TOF protein mass spectrometry data of 167 breast cancer and normal samples. Author: Xiaochun Li Maintainer: Xiaochun Li License: GPL source.ver: src/contrib/ProData_0.2.2.tar.gz win.binary.ver: bin/windows/contrib/2.3/ProData_0.2.2.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/ProData_0.2.2.tgz Package: RbcBook1 Version: 1.0.2 Title: Support for Springer monograph on Bioconductor Description: tools for building book Author: Vince Carey and Wolfgang Huber Maintainer: Vince Carey URL: http://www.biostat.harvard.edu/~carey License: GPL2 source.ver: src/contrib/RbcBook1_1.0.2.tar.gz win.binary.ver: bin/windows/contrib/2.3/RbcBook1_1.0.2.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/RbcBook1_1.0.2.tgz vignettes: vignettes/RbcBook1/inst/doc/RbcBook1.pdf Package: SpikeInSubset Version: 1.0.3 Depends: R (>= 1.6), affy (>= 1.0) Title: Part of Affymetrix's Spike-In Experiment Data Description: Includes probe-level and expression data for the HGU133 and HGU95 spike-in experiments Author: Rafael Irizarry and Zhijin Wu Maintainer: Rafael A. Irizarry License: LGPL source.ver: src/contrib/SpikeInSubset_1.0.3.tar.gz win.binary.ver: bin/windows/contrib/2.3/SpikeInSubset_1.0.3.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/SpikeInSubset_1.0.3.tgz Package: yeastExpData Version: 0.6.0 Depends: R (>= 2.2), graph (>= 1.9.26) Title: Yeast Experimental Data Description: A collection of different sets of experimental data from yeast. Author: R. Gentleman Maintainer: R. Gentleman License: GPL source.ver: src/contrib/yeastExpData_0.6.0.tar.gz win.binary.ver: bin/windows/contrib/2.3/yeastExpData_0.6.0.zip mac.binary.ver: bin/macosx/universal/contrib/2.3/yeastExpData_0.6.0.tgz vignettes: vignettes/yeastExpData/inst/doc/GeResults.pdf, vignettes/yeastExpData/inst/doc/meetGe.pdf, vignettes/yeastExpData/inst/doc/proteinGraphs.pdf, vignettes/yeastExpData/inst/doc/yeastExample.pdf, vignettes/yeastExpData/inst/doc/yeastExample-sG2.pdf, vignettes/yeastExpData/inst/doc/yeastExample-subGraphs.pdf