Bioconductor Task View: Statistics

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Package Maintainer Title
adSplit Claudio Lottaz Annotation-Driven Clustering
affylmGUI Keith Satterley GUI for affy analysis using limma package
bim Brian S. Yandell Bayesian Interval Mapping Diagnostics
Biobase Biocore Team Biobase: Base functions for Bioconductor
bioDist Biocore Team Different distance measures
bridge Raphael Gottardo Bayesian Robust Inference for Differential Gene Expression
Category R. Gentleman Category Analysis
clusterStab James W. MacDonald Compute cluster stability scores for microarray data
CoCiteStats R. Gentleman Different test statistics based on co-citation.
copa James W. MacDonald Functions to perform cancer outlier profile analysis.
ctc Antoine Lucas Cluster and Tree Conversion.
daMA Jobst Landgrebe Efficient design and analysis of factorial two-colour microarray data
DEDS Yuanyuan Xiao Differential Expression via Distance Summary for Microarray Data
diffGeneAnalysis Choudary Jagarlamudi Performs differential gene expression Analysis
EBarrays Deepayan Sarkar Empirical Bayes for Microarrays
edd Vince Carey expression density diagnostics
factDesign Denise Scholtens Factorial designed microarray experiment analysis
fdrame Effi Kenigsberg FDR adjustments of Microarray Experiments (FDR-AME)
genefilter Biocore Team genefilter: filter genes
GeneMeta Biocore Team MetaAnalysis for High Throughput Experiments
geneRecommender Greg Hather A gene recommender algorithm to identify genes coexpressed with a query set of genes
GeneTS Korbinian Strimmer Microarray Time Series and Network Analysis
GlobalAncova R. Meister Calculates a global test for differential gene expression between groups
globaltest Jelle Goeman Testing Association of Groups of Genes with a Clinical Variable
goCluster Gunnar Wrobel Analysis of clustering results in conjunction with annotation data.
GOstats R. Gentleman Tools for manipulating GO and microarrays.
gpls Biocore Team Classification using generalized partial least squares
GraphAT Thomas LaFramboise Graph Theoretic Association Tests
HEM HyungJun Cho Heterogeneous error model for identification of differentially expressed genes under multiple conditions
hopach Katherine S. Pollard Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Icens Biocore Team NPMLE for Censored and Truncated Data
impute Balasubramanian Narasimhan impute: Imputation for microarray data
limma Gordon Smyth Linear Models for Microarray Data
limmaGUI Keith Satterley GUI for limma package
LMGene Geun Cheol Lee LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
logicFS Holger Schwender Identification of SNP Interactions
LPE Nitin Jain Methods for analyzing microarray data using Local Pooled Error (LPE) method
maanova Lei Wu Tools for analyzing Micro Array experiments
macat Joern Toedling MicroArray Chromosome Analysis Tool
made4 Aedin Culhane Multivariate analysis of microarray data using ADE4
MantelCorr Brian Steinmeyer Compute Mantel Cluster Correlations
maSigPro Ana Conesa Significant Gene Expression Profile Differeneces in Time Course Microarray Data
MCRestimate Markus Ruschhaupt Misclassification error estimation with cross-validation
MeasurementError.cor Beiying Ding Measurement Error model estimate for correlation coefficient
MergeMaid Xiaogang Zhong Merge Maid
metaArray Hyungwon Choi Integration of Microarray Data for Meta-analysis
Mfuzz Matthias Futschik Soft clustering of time series gene expression data
MiPP HyungJun Cho Misclassification Penalized Posterior Classification
MLInterfaces V. Carey Uniform interfaces to R machine learning procedures for data in Bioconductor containers
multtest Katherine S. Pollard Resampling-based multiple hypothesis testing
nudge N. Dean Normal Uniform Differential Gene Expression detection
OCplus Alexander Ploner Operating characteristics plus sample size and local fdr for microarray experiments
OrderedList Claudio Lottaz Similarities of Ordered Gene Lists
pairseqsim Witold Wolski pairwise sequence alignment similarity simple.
pamr Rob TIbshirani Pam: prediction analysis for microarrays
pdmclass James W. MacDonald Classification of Microarray Samples using Penalized Discriminant Methods
pickgene Brian S. Yandell Adaptive Gene Picking for Microarray Expression Data Analysis
plgem Mattia Pelizzola Power Law Global Error Model
qvalue John D. Storey Q-value estimation for false discovery rate control
RankProd Fangxin Hong Rank Product method for identifying differentially expressed genes with application in meta-analysis
rflowcyt N. Le Meur Statistical tools and data structures for analytic flow cytometry
ROC Vince Carey utilities for ROC, with uarray focus
safe William T. Barry Significance Analysis of Function and Expression
siggenes Holger Schwender SAM and Efron's empirical Bayes approaches
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data
sizepower Weiliang Qiu Sample Size and Power Calculation in Micorarray Studies
sscore Richard Kennedy S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
ssize Gregory R. Warnes Estimate Microarry Sample Size
stam Claudio Lottaz Structured Analysis of Microarray Data
timecourse Yu Chuan Tai Statistical Analysis for Developmental Microarray Time Course Data
twilight Stefanie Scheid Estimation of local false discovery rate
webbioc Colin A. Smith Bioconductor Web Interface